Holographic microscopy with Python and HoloPy

Citation:

Barkley, S. ; Dimiduk, T. G. ; Fung, J. ; Kaz, D. M. ; Manoharan, V. N. ; McGorty, R. ; Perry, R. W. ; Wang, A. Holographic microscopy with Python and HoloPy. Computing in Science & Engineering 2019, 22, 72-82.

Publisher's Version

Recent Publications

Williams, L. A. ; Neophytou, A. ; Garmann, R. F. ; Chakrabarti, R. ; Manoharan, V. N. Effect of coat-protein concentration on the self-assembly of bacteriophage MS2 capsids around RNA. Nanoscale 2024. Publisher's Version

Sun, J. H. ; Plummer, A. ; Zhang, G. H. ; Nelson, D. R. ; Manoharan, V. N. Geometric frustration of hard-disk packings on cones. Physical Review E 2023, 108, 054608. Publisher's Version

de Wit, X. M. ; Paine, A. W. ; Martin, C. ; Goldfain, A. M. ; Garmann, R. F. ; Manoharan, V. N. Precise characterization of nanometer-scale systems using interferometric scattering microscopy and Bayesian analysis. Applied Optics 2023, 62, 7205-7215. Publisher's Version

Zeng, C. ; Faaborg, M. W. ; Sherif, A. ; Falk, M. J. ; Hajian, R. ; Xiao, M. ; Hartig, K. ; Bar-Sinai, Y. ; Brenner, M. P. 3D-printed machines that manipulate microscopic objects using capillary forces. Nature 2022, 611, 68-73. Publisher's Version

Martin, C. ; Altman, L. E. ; Rawat, S. ; Wang, A. ; Grier, D. G. ; Manoharan, V. N. In-line holographic microscopy with model-based analysis. Nature Reviews Methods Primers 2022, 2 83. Publisher's Version

Garmann, R. F. ; Goldfain, A. M. ; Tanimoto, C. R. ; Beren, C. E. ; Vasquez, F. F. ; Villareal, D. A. ; Knobler, C. M. ; Gelbart, W. M. ; Manoharan, V. N. Single-particle studies of the effects of RNA-protein interactions on the self-assembly of RNA virus particles. Proceedings of the National Academy of Sciences 2022, 119, e2206292119. Publisher's Version

Manoharan Lab

Soft matter, biophysics, and optics

Holographic microscopy with Python and HoloPy

Citation:

Recent Publications